Simbody  3.6
GCVSPLUtil.h
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1 #ifndef SimTK_SIMMATH_GCVSPL_UTIL_H_
2 #define SimTK_SIMMATH_GCVSPL_UTIL_H_
3 
4 /* -------------------------------------------------------------------------- *
5  * Simbody(tm): SimTKmath *
6  * -------------------------------------------------------------------------- *
7  * This is part of the SimTK biosimulation toolkit originating from *
8  * Simbios, the NIH National Center for Physics-Based Simulation of *
9  * Biological Structures at Stanford, funded under the NIH Roadmap for *
10  * Medical Research, grant U54 GM072970. See https://simtk.org/home/simbody. *
11  * *
12  * Portions copyright (c) 2008-12 Stanford University and the Authors. *
13  * Authors: Peter Eastman *
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23  * See the License for the specific language governing permissions and *
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26 
27 #include "SimTKcommon.h"
29 
30 // These are global functions.
31 int SimTK_gcvspl_(const SimTK::Real *, const SimTK::Real *, int *, const SimTK::Real *, const SimTK::Real *, int *, int *,
32  int *, int *, SimTK::Real *, SimTK::Real *, int *, SimTK::Real *, int *);
33 SimTK::Real SimTK_splder_(int *, int *, int *, SimTK::Real *, const SimTK::Real *, const SimTK::Real *, int *, SimTK::Real *, int);
34 
35 namespace SimTK {
36 
45 public:
46  static void gcvspl(const Vector& x, const Vector& y, const Vector& wx, Real wy, int m, int md, Real val, Vector& c, Vector& wk, int& ier);
47  template <int K>
48  static void gcvspl(const Vector& x, const Vector_<Vec<K> >& y, const Vector& wx, Vec<K> wy, int m, int md, Real val, Vector_<Vec<K> >& c, Vector& wk, int& ier);
49  static Real splder(int derivOrder, int degree, Real t, const Vector& x, const Vector& coeff);
50  template <int K>
51  static Vec<K> splder(int derivOrder, int degree, Real t, const Vector& x, const Vector_<Vec<K> >& coeff);
52 };
53 
54 template <int K>
55 void GCVSPLUtil::gcvspl(const Vector& x, const Vector_<Vec<K> >& y, const Vector& wx, Vec<K> wy, int degree, int md, Real val, Vector_<Vec<K> >& c, Vector& wk, int& ier) {
56  SimTK_APIARGCHECK_ALWAYS(degree > 0 && degree%2==1, "GCVSPLUtil", "gcvspl", "degree must be positive and odd");
57  SimTK_APIARGCHECK_ALWAYS(y.size() >= x.size(), "GCVSPLUtil", "gcvspl", "y is shorter than x");
58  SimTK_APIARGCHECK_ALWAYS(wx.size() >= x.size(), "GCVSPLUtil", "gcvspl", "wx and x must be the same size");
59  SimTK_APIARGCHECK_ALWAYS(x.hasContiguousData(), "GCVSPLUtil", "gcvspl", "x must have contiguous storage (i.e. not be a view)");
60  SimTK_APIARGCHECK_ALWAYS(wk.hasContiguousData(), "GCVSPLUtil", "gcvspl", "wk must have contiguous storage (i.e. not be a view)");
61 
62  // Create various temporary variables.
63 
64  int m = (degree+1)/2;
65  int n = x.size();
66  int ny = y.size();
67  Vector yvec(ny*K);
68  int index = 0;
69  for (int j = 0; j < K; ++j)
70  for (int i = 0; i < ny; ++i)
71  yvec[index++] = y[i][j];
72  int nc = n*K;
73  Vector cvec(nc);
74  wk.resize(6*(m*n+1)+n);
75  int k = K;
76 
77  // Invoke GCV.
78 
79  SimTK_gcvspl_(&x[0], &yvec[0], &ny, &wx[0], &wy[0], &m, &n, &k, &md, &val, &cvec[0], &n, &wk[0], &ier);
80  if (ier != 0) {
81  SimTK_APIARGCHECK_ALWAYS(n >= 2*m, "GCVSPLUtil", "gcvspl", "Too few data points");
82  SimTK_APIARGCHECK_ALWAYS(ier != 2, "GCVSPLUtil", "gcvspl", "The values in x must be strictly increasing");
83  SimTK_APIARGCHECK_ALWAYS(ier == 0, "GCVSPLUtil", "gcvspl", "GCVSPL returned an error code");
84  }
85  c.resize(n);
86  index = 0;
87  for (int j = 0; j < K; ++j)
88  for (int i = 0; i < n; ++i)
89  c[i][j] = cvec[index++];
90 }
91 
92 template <int K>
93 Vec<K> GCVSPLUtil::splder(int derivOrder, int degree, Real t, const Vector& x, const Vector_<Vec<K> >& coeff) {
94  assert(derivOrder >= 0);
95  assert(t >= x[0] && t <= x[x.size()-1]);
96  assert(x.size() == coeff.size());
97  assert(degree > 0 && degree%2==1);
98  assert(x.hasContiguousData());
99 
100  // Create various temporary variables.
101 
102 
103  Vec<K> result;
104  int m = (degree+1)/2;
105  int n = x.size();
106  int interval = (int) ceil(n*(t-x[0])/(x[n-1]-x[0]));
107 
108  const int MaxCheapM = 32;
109  Real qbuf[2*MaxCheapM];
110 
111  Real *q = qbuf; // tentatively
112  if (m > MaxCheapM)
113  q = new Real[2*m]; // use heap instead; don't forget to delete
114 
115  int offset = (int) (&coeff[1][0]-&coeff[0][0]);
116 
117  // Evaluate the spline one component at a time.
118 
119  for (int i = 0; i < K; ++i)
120  result[i] = SimTK_splder_(&derivOrder, &m, &n, &t, &x[0], &coeff[0][i], &interval, q, offset);
121 
122  if (m > MaxCheapM)
123  delete[] q;
124 
125  return result;
126 }
127 
128 } // namespace SimTK
129 
130 #endif // SimTK_SIMMATH_GCVSPL_UTIL_H_
131 
132 
#define SimTK_APIARGCHECK_ALWAYS(cond, className, methodName, msg)
Definition: ExceptionMacros.h:224
This is the top-level SimTK namespace into which all SimTK names are placed to avoid collision with o...
Definition: Assembler.h:37
int SimTK_gcvspl_(const SimTK::Real *, const SimTK::Real *, int *, const SimTK::Real *, const SimTK::Real *, int *, int *, int *, int *, SimTK::Real *, SimTK::Real *, int *, SimTK::Real *, int *)
SimTK_Real Real
This is the default compiled-in floating point type for SimTK, either float or double.
Definition: SimTKcommon/include/SimTKcommon/internal/common.h:606
This class provides entry points for using the GCVSPL algorithm in terms of SimTK data types...
Definition: GCVSPLUtil.h:44
bool hasContiguousData() const
Definition: MatrixBase.h:837
This is a fixed-length column vector designed for no-overhead inline computation. ...
Definition: SimTKcommon/include/SimTKcommon/internal/common.h:618
static Real splder(int derivOrder, int degree, Real t, const Vector &x, const Vector &coeff)
Includes internal headers providing declarations for the basic SimTK Core classes, including Simmatrix.
This is the header file that every Simmath compilation unit should include first. ...
int size() const
Definition: VectorBase.h:396
SimTK::Real SimTK_splder_(int *, int *, int *, SimTK::Real *, const SimTK::Real *, const SimTK::Real *, int *, SimTK::Real *, int)
static void gcvspl(const Vector &x, const Vector &y, const Vector &wx, Real wy, int m, int md, Real val, Vector &c, Vector &wk, int &ier)
VectorBase & resize(int m)
Definition: VectorBase.h:451
#define SimTK_SIMMATH_EXPORT
Definition: SimTKmath/include/simmath/internal/common.h:64